The Flame of Destruction is lit in Oracle of Seasons when General Onox throws the seasons of Holodrum into chaos by kidnapping Din and sinking the Temple of Seasons into Subrosia. Despite the fact that Onox is defeated by Link, the damage caused to the land of Holodrum and Subrosia is enough to accomplish Twinrova's plan to light up the Flame of Destruction.
Oracle of Ages
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↑"The Flames of Sorrow and Destruction burn brightly! Only the Flame of Despair remains! Eee hee hee hee! When the three flames are lit, we will offer the sacrifice and complete the Dark Rites. Then the Evil King shall return!" — Twinrova (Oracle of Seasons)
↑"Down, Temple of Seasons!!! Spring, summer, fall, winter... Fall into chaos! Then the Flame of Destruction shall burn with the Flame of Sorrow, and the Evil King shall return!" — Twinrova (Oracle of Seasons)
↑"Onox has fallen, but the damage he has done to this land burns on in the Flame of Destruction! When this flame lights the dark, our wish shall be granted! Hya, ha, ha, ha!" — Twinrova (Oracle of Seasons)